Detailed information of SNP:
|
SNP ID:
sf1100082618(Gbrowse)
Chromosome: chr11 Position: 82618 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 92.82% | 7.18% |
| All Indica | 758 | 86.94% | 13.06% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 83.19% | 16.81% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 200 | 81.50% | 18.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100082618 | C->T | LOC_Os11g01140(LOC_Os11g01140.2) | INTRON |
| sf1100082618 | C->T | LOC_Os11g01140(LOC_Os11g01140.3) | INTRON |
| sf1100082618 | C->T | LOC_Os11g01140(LOC_Os11g01140.1) | INTRON |