Detailed information of SNP:
|
SNP ID:
sf1100086658(Gbrowse)
Chromosome: chr11 Position: 86658 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 54.00% | 46.00% |
| All Indica | 792 | 87.63% | 12.37% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 211 | 66.82% | 33.18% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100086658 | G->A | LOC_Os11g01140(LOC_Os11g01140.2) | INTRON |
| sf1100086658 | G->A | LOC_Os11g01140(LOC_Os11g01140.3) | INTRON |
| sf1100086658 | G->A | LOC_Os11g01140(LOC_Os11g01140.1) | INTRON |