Detailed information of SNP:
|
SNP ID:
sf1100095982(Gbrowse)
Chromosome: chr11 Position: 95982 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1305 | 91.26% | 8.74% |
| All Indica | 695 | 85.76% | 14.24% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 308 | 82.79% | 17.21% |
| Indica II | 192 | 93.23% | 6.77% |
| Indica Intermediate | 195 | 83.08% | 16.92% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100095982 | A->G | LOC_Os11g01154(LOC_Os11g01154.1) | INTRON |
| sf1100095982 | A->G | LOC_Os11g01154(LOC_Os11g01154.4) | INTRON |