Detailed information of SNP:
|
SNP ID:
sf1100108327(Gbrowse)
Chromosome: chr11 Position: 108327 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.60% | 46.40% |
| All Indica | 798 | 86.59% | 13.41% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100108327 | T->G | INTERGENIC | None |