Detailed information of SNP:
|
SNP ID:
sf1100142009(Gbrowse)
Chromosome: chr11 Position: 142009 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 92.06% | 7.94% |
| All Indica | 797 | 92.97% | 7.03% |
| All Japonica | 491 | 89.61% | 10.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 76.30% | 23.70% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 89 | 53.93% | 46.07% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100142009 | G->A | INTERGENIC | None |