Detailed information of SNP:
|
SNP ID:
sf1100143813(Gbrowse)
Chromosome: chr11 Position: 143813 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 95.87% | 4.13% |
| All Indica | 793 | 94.07% | 5.93% |
| All Japonica | 489 | 98.36% | 1.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 79.90% | 20.10% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 88 | 92.05% | 7.95% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100143813 | C->G | LOC_Os11g01270(LOC_Os11g01270.1) | Non-Synonymous SNP |