Detailed information of SNP:
|
SNP ID:
sf1100201475(Gbrowse)
Chromosome: chr11 Position: 201475 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 90.91% | 9.09% |
| All Indica | 788 | 86.29% | 13.71% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 367 | 94.28% | 5.72% |
| Indica II | 211 | 73.46% | 26.54% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100201475 | C->T | LOC_Os11g01340(LOC_Os11g01340.2) | INTRON |
| sf1100201475 | C->T | LOC_Os11g01340(LOC_Os11g01340.3) | INTRON |
| sf1100201475 | C->T | LOC_Os11g01340(LOC_Os11g01340.4) | INTRON |