Detailed information of SNP:
|
SNP ID:
sf1100247728(Gbrowse)
Chromosome: chr11 Position: 247728 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 51.45% | 48.55% |
| All Indica | 797 | 86.95% | 13.05% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100247728 | T->C | LOC_Os11g01400(LOC_Os11g01400.1) | INTRON |