Detailed information of SNP:
|
SNP ID:
sf1100319954(Gbrowse)
Chromosome: chr11 Position: 319954 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 54.38% | 45.62% |
| All Indica | 789 | 21.93% | 78.07% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 369 | 13.28% | 86.72% |
| Indica II | 212 | 40.09% | 59.91% |
| Indica Intermediate | 208 | 18.75% | 81.25% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100319954 | C->T | INTERGENIC | None |