Detailed information of SNP:
|
SNP ID:
sf1100324849(Gbrowse)
Chromosome: chr11 Position: 324849 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 51.86% | 48.14% |
| All Indica | 794 | 85.77% | 14.23% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 53 | 33.96% | 66.04% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 211 | 62.56% | 37.44% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 44.74% | 55.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100324849 | T->C | INTERGENIC | None |