Detailed information of SNP:
|
SNP ID:
sf1100370982(Gbrowse)
Chromosome: chr11 Position: 370982 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 97.72% | 2.28% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 483 | 95.03% | 4.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 92.83% | 7.17% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100370982 | C->T | INTERGENIC | None |