Detailed information of SNP:



SNP ID: sf1100370982(Gbrowse)

Chromosome: chr11

Position: 370982
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1402 97.72% 2.28%
All Indica797 99.25% 0.75%
All Japonica483 95.03% 4.97%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II211 97.16% 2.84%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica321 92.83% 7.17%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 95.12% 4.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1100370982 C->T INTERGENIC None