Detailed information of SNP:
|
SNP ID:
sf1100432024(Gbrowse)
Chromosome: chr11 Position: 432024 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1296 | 93.13% | 6.87% |
| All Indica | 749 | 88.38% | 11.62% |
| All Japonica | 427 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 345 | 80.58% | 19.42% |
| Indica II | 205 | 97.07% | 2.93% |
| Indica Intermediate | 199 | 92.96% | 7.04% |
| Temperate Japonica | 286 | 100.00% | 0.00% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100432024 | G->A | INTERGENIC | None |