Detailed information of SNP:
|
SNP ID:
sf1100494761(Gbrowse)
Chromosome: chr11 Position: 494761 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1321 | 66.39% | 33.61% |
| All Indica | 718 | 45.54% | 54.46% |
| All Japonica | 486 | 93.83% | 6.17% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 336 | 48.51% | 51.49% |
| Indica II | 190 | 27.89% | 72.11% |
| Indica Intermediate | 192 | 57.81% | 42.19% |
| Temperate Japonica | 329 | 94.53% | 5.47% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100494761 | G->A | LOC_Os11g01920(LOC_Os11g01920.1) | Synonymous |