Detailed information of SNP:
|
SNP ID:
sf1100522031(Gbrowse)
Chromosome: chr11 Position: 522031 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 88.75% | 11.25% |
| All Indica | 767 | 80.44% | 19.56% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 359 | 77.99% | 22.01% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 198 | 68.69% | 31.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100522031 | G->T | LOC_Os11g01970(LOC_Os11g01970.1) | Non-Synonymous SNP |