Detailed information of SNP:



SNP ID: sf1100537310(Gbrowse)

Chromosome: chr11

Position: 537310
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 97.53% 2.47%
All Indica799 99.62% 0.38%
All Japonica496 93.95% 6.05%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 98.59% 1.41%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 100.00% 0.00%
Tropical Japonica94 68.09% 31.91%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1100537310 C->T LOC_Os11g02010(LOC_Os11g02010.1) INTRON