Detailed information of SNP:
|
SNP ID:
sf1100553529(Gbrowse)
Chromosome: chr11 Position: 553529 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 81.95% | 18.05% |
| All Indica | 799 | 74.59% | 25.41% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100553529 | C->T | LOC_Os11g02054(LOC_Os11g02054.1) | INTRON |