Detailed information of SNP:
|
SNP ID:
sf1100570684(Gbrowse)
Chromosome: chr11 Position: 570684 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 95.95% | 4.05% |
| All Indica | 772 | 99.87% | 0.13% |
| All Japonica | 445 | 88.54% | 11.46% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 369 | 99.73% | 0.27% |
| Indica II | 203 | 100.00% | 0.00% |
| Indica Intermediate | 200 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 95.36% | 4.64% |
| Tropical Japonica | 83 | 75.90% | 24.10% |
| Japonica Intermediate | 60 | 71.67% | 28.33% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100570684 | C->T | LOC_Os11g02100(LOC_Os11g02100.1) | Non-Synonymous SNP |