Detailed information of SNP:
|
SNP ID:
sf1100597519(Gbrowse)
Chromosome: chr11 Position: 597519 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1210 | 96.36% | 3.64% |
| All Indica | 706 | 99.86% | 0.14% |
| All Japonica | 389 | 89.20% | 10.80% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 342 | 99.71% | 0.29% |
| Indica II | 181 | 100.00% | 0.00% |
| Indica Intermediate | 183 | 100.00% | 0.00% |
| Temperate Japonica | 258 | 96.12% | 3.88% |
| Tropical Japonica | 77 | 75.32% | 24.68% |
| Japonica Intermediate | 54 | 75.93% | 24.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100597519 | C->A | LOC_Os11g02159(LOC_Os11g02159.3) | INTRON |
| sf1100597519 | C->A | LOC_Os11g02159(LOC_Os11g02159.2) | INTRON |
| sf1100597519 | C->A | LOC_Os11g02159(LOC_Os11g02159.1) | INTRON |