Detailed information of SNP:
|
SNP ID:
sf1100662634(Gbrowse)
Chromosome: chr11 Position: 662634 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 96.42% | 3.58% |
| All Indica | 753 | 97.74% | 2.26% |
| All Japonica | 467 | 94.00% | 6.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 350 | 98.00% | 2.00% |
| Indica II | 202 | 98.51% | 1.49% |
| Indica Intermediate | 201 | 96.52% | 3.48% |
| Temperate Japonica | 319 | 99.37% | 0.63% |
| Tropical Japonica | 84 | 69.05% | 30.95% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100662634 | G->T | INTERGENIC | None |