Detailed information of SNP:
|
SNP ID:
sf1100675099(Gbrowse)
Chromosome: chr11 Position: 675099 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 91.05% | 8.95% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 480 | 81.25% | 18.75% |
| Aus | 64 | 59.38% | 40.62% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 327 | 91.44% | 8.56% |
| Tropical Japonica | 88 | 65.91% | 34.09% |
| Japonica Intermediate | 65 | 50.77% | 49.23% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100675099 | G->A | INTERGENIC | None |