Detailed information of SNP:
|
SNP ID:
sf1100681308(Gbrowse)
Chromosome: chr11 Position: 681308 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 87.84% | 12.16% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 479 | 68.27% | 31.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 58.39% | 41.61% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 64 | 81.25% | 18.75% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100681308 | T->C | INTERGENIC | None |