Detailed information of SNP:
|
SNP ID:
sf1100688043(Gbrowse)
Chromosome: chr11 Position: 688043 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 91.92% | 8.08% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 483 | 83.02% | 16.98% |
| Aus | 63 | 60.32% | 39.68% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 91.49% | 8.51% |
| Tropical Japonica | 92 | 71.74% | 28.26% |
| Japonica Intermediate | 62 | 54.84% | 45.16% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100688043 | G->A | INTERGENIC | None |