Detailed information of SNP:
|
SNP ID:
sf1100720326(Gbrowse)
Chromosome: chr11 Position: 720326 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1328 | 95.56% | 4.44% |
| All Indica | 779 | 99.87% | 0.13% |
| All Japonica | 429 | 87.18% | 12.82% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 204 | 99.51% | 0.49% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 296 | 96.62% | 3.38% |
| Tropical Japonica | 73 | 64.38% | 35.62% |
| Japonica Intermediate | 60 | 68.33% | 31.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100720326 | A->T | LOC_Os11g02410(LOC_Os11g02410.1) | INTRON |