Detailed information of SNP:
|
SNP ID:
sf1100737562(Gbrowse)
Chromosome: chr11 Position: 737562 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1346 | 55.65% | 44.35% |
| All Indica | 729 | 96.57% | 3.43% |
| All Japonica | 495 | 1.41% | 98.59% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 323 | 99.38% | 0.62% |
| Indica II | 208 | 91.83% | 8.17% |
| Indica Intermediate | 198 | 96.97% | 3.03% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100737562 | T->G | LOC_Os11g02460(LOC_Os11g02460.2) | INTRON |
| sf1100737562 | T->G | LOC_Os11g02460(LOC_Os11g02460.1) | INTRON |