Detailed information of SNP:
|
SNP ID:
sf1100778105(Gbrowse)
Chromosome: chr11 Position: 778105 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 81.99% | 18.01% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 442 | 56.56% | 43.44% |
| Aus | 63 | 47.62% | 52.38% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 305 | 73.77% | 26.23% |
| Tropical Japonica | 79 | 3.80% | 96.20% |
| Japonica Intermediate | 58 | 37.93% | 62.07% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100778105 | G->A | INTERGENIC | None |