Detailed information of SNP:
|
SNP ID:
sf1100794911(Gbrowse)
Chromosome: chr11 Position: 794911 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 82.13% | 17.87% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 468 | 58.76% | 41.24% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 317 | 76.66% | 23.34% |
| Tropical Japonica | 89 | 6.74% | 93.26% |
| Japonica Intermediate | 62 | 41.94% | 58.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100794911 | G->A | INTERGENIC | None |