Detailed information of SNP:
|
SNP ID:
sf1100841465(Gbrowse)
Chromosome: chr11 Position: 841465 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 59.65% | 40.35% |
| All Indica | 795 | 97.86% | 2.14% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100841465 | T->G | INTERGENIC | None |