Detailed information of SNP:
|
SNP ID:
sf1100881781(Gbrowse)
Chromosome: chr11 Position: 881781 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1269 | 85.58% | 14.42% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 362 | 60.22% | 39.78% |
| Aus | 60 | 60.00% | 40.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 238 | 78.57% | 21.43% |
| Tropical Japonica | 74 | 13.51% | 86.49% |
| Japonica Intermediate | 50 | 42.00% | 58.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100881781 | C->T | LOC_Os11g02720(LOC_Os11g02720.1) | INTRON |