Detailed information of SNP:
|
SNP ID:
sf1100918004(Gbrowse)
Chromosome: chr11 Position: 918004 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 94.80% | 5.20% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 485 | 86.60% | 13.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 84.50% | 15.50% |
| Tropical Japonica | 90 | 95.56% | 4.44% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100918004 | G->A | INTERGENIC | None |