Detailed information of SNP:
|
SNP ID:
sf1100921070(Gbrowse)
Chromosome: chr11 Position: 921070 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 97.72% | 2.28% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 443 | 93.23% | 6.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 296 | 91.22% | 8.78% |
| Tropical Japonica | 85 | 95.29% | 4.71% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100921070 | C->T | LOC_Os11g02780(LOC_Os11g02780.1) | INTRON |