Detailed information of SNP:
|
SNP ID:
sf1100922865(Gbrowse)
Chromosome: chr11 Position: 922865 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 86.15% | 13.85% |
| All Indica | 729 | 78.60% | 21.40% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 339 | 95.28% | 4.72% |
| Indica II | 193 | 47.15% | 52.85% |
| Indica Intermediate | 197 | 80.71% | 19.29% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100922865 | C->T | LOC_Os11g02780(LOC_Os11g02780.1) | Synonymous |