Detailed information of SNP:
|
SNP ID:
sf1100928953(Gbrowse)
Chromosome: chr11 Position: 928953 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1181 | 69.01% | 30.99% |
| All Indica | 573 | 45.20% | 54.80% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 59 | 69.49% | 30.51% |
| Indica I | 264 | 50.00% | 50.00% |
| Indica II | 158 | 39.87% | 60.13% |
| Indica Intermediate | 151 | 42.38% | 57.62% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100928953 | T->C | INTERGENIC | None |