Detailed information of SNP:
|
SNP ID:
sf1100953915(Gbrowse)
Chromosome: chr11 Position: 953915 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 59.27% | 40.73% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100953915 | A->T | INTERGENIC | None |