Detailed information of SNP:
|
SNP ID:
sf1100977685(Gbrowse)
Chromosome: chr11 Position: 977685 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 58.84% | 41.16% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 64 | 53.12% | 46.88% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100977685 | C->T | LOC_Os11g02880(LOC_Os11g02880.1) | Non-Synonymous SNP |