Detailed information of SNP:
|
SNP ID:
sf1100986582(Gbrowse)
Chromosome: chr11 Position: 986582 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 59.53% | 40.47% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 62 | 59.68% | 40.32% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100986582 | C->T | LOC_Os11g02890(LOC_Os11g02890.1) | SNPs that introduce stop codons |