Detailed information of SNP:
|
SNP ID:
sf1100987117(Gbrowse)
Chromosome: chr11 Position: 987117 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1325 | 56.91% | 43.09% |
| All Indica | 730 | 94.66% | 5.34% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 50 | 74.00% | 26.00% |
| Indica I | 336 | 97.92% | 2.08% |
| Indica II | 201 | 89.55% | 10.45% |
| Indica Intermediate | 193 | 94.30% | 5.70% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100987117 | A->C | LOC_Os11g02890(LOC_Os11g02890.1) | INTRON |