Detailed information of SNP:
|
SNP ID:
sf1100987119(Gbrowse)
Chromosome: chr11 Position: 987119 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1338 | 56.43% | 43.57% |
| All Indica | 733 | 94.54% | 5.46% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 59 | 61.02% | 38.98% |
| Indica I | 337 | 97.92% | 2.08% |
| Indica II | 203 | 88.67% | 11.33% |
| Indica Intermediate | 193 | 94.82% | 5.18% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100987119 | G->A | LOC_Os11g02890(LOC_Os11g02890.1) | INTRON |