Detailed information of SNP:
|
SNP ID:
sf1100990047(Gbrowse)
Chromosome: chr11 Position: 990047 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 53.96% | 46.04% |
| All Indica | 783 | 88.63% | 11.37% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 368 | 91.85% | 8.15% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 205 | 86.34% | 13.66% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1100990047 | G->A | LOC_Os11g02890(LOC_Os11g02890.1) | Synonymous |