Detailed information of SNP:
|
SNP ID:
sf1101015915(Gbrowse)
Chromosome: chr11 Position: 1015915 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 58.36% | 41.64% |
| All Indica | 797 | 94.86% | 5.14% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 64 | 57.81% | 42.19% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101015915 | C->T | LOC_Os11g02940(LOC_Os11g02940.1) | Non-Synonymous SNP |