Detailed information of SNP:
|
SNP ID:
sf1101042469(Gbrowse)
Chromosome: chr11 Position: 1042469 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 61.00% | 39.00% |
| All Indica | 796 | 97.61% | 2.39% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101042469 | C->T | LOC_Os11g02990(LOC_Os11g02990.1) | Synonymous |