Detailed information of SNP:
|
SNP ID:
sf1101082367(Gbrowse)
Chromosome: chr11 Position: 1082367 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 57.77% | 42.23% |
| All Indica | 796 | 94.97% | 5.03% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101082367 | G->T | INTERGENIC | None |