Detailed information of SNP:
SNP ID:
sf1101083692(Gbrowse)
Chromosome: chr11 Position: 1083692 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1418 | 59.80% | 40.20% |
All Indica | 799 | 97.50% | 2.50% |
All Japonica | 497 | 1.41% | 98.59% |
Aus | 67 | 52.24% | 47.76% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 91.08% | 8.92% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 1.49% | 98.51% |
Tropical Japonica | 94 | 1.06% | 98.94% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 57.14% | 42.86% |
Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1101083692 | C->T | INTERGENIC | None |