Detailed information of SNP:
|
SNP ID:
sf1101144298(Gbrowse)
Chromosome: chr11 Position: 1144298 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 58.43% | 41.57% |
| All Indica | 793 | 91.55% | 8.45% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 370 | 91.62% | 8.38% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101144298 | T->C | INTERGENIC | None |