Detailed information of SNP:
|
SNP ID:
sf1101175878(Gbrowse)
Chromosome: chr11 Position: 1175878 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.76% | 33.24% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 496 | 15.93% | 84.07% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 13.13% | 86.87% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101175878 | A->G | LOC_Os11g03230(LOC_Os11g03230.3) | UTR_3_PRIME |
| sf1101175878 | A->G | LOC_Os11g03230(LOC_Os11g03230.2) | Synonymous |
| sf1101175878 | A->G | LOC_Os11g03230(LOC_Os11g03230.1) | Synonymous |