Detailed information of SNP:
|
SNP ID:
sf1101176322(Gbrowse)
Chromosome: chr11 Position: 1176322 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 97.32% | 2.68% |
| All Indica | 797 | 95.61% | 4.39% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101176322 | G->A | LOC_Os11g03230(LOC_Os11g03230.3) | INTRON |
| sf1101176322 | G->A | LOC_Os11g03230(LOC_Os11g03230.2) | INTRON |
| sf1101176322 | G->A | LOC_Os11g03230(LOC_Os11g03230.1) | INTRON |
| sf1101176322 | G->A | LOC_Os11g03230(LOC_Os11g03230.1) | SNPs that disrupt splice sites |