Detailed information of SNP:
|
SNP ID:
sf1101194616(Gbrowse)
Chromosome: chr11 Position: 1194616 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1216 | 51.89% | 48.11% |
| All Indica | 618 | 89.16% | 10.84% |
| All Japonica | 495 | 1.41% | 98.59% |
| Aus | 55 | 90.91% | 9.09% |
| Indica I | 290 | 93.45% | 6.55% |
| Indica II | 164 | 87.80% | 12.20% |
| Indica Intermediate | 164 | 82.93% | 17.07% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 34 | 41.18% | 58.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101194616 | T->C | INTERGENIC | None |