Detailed information of SNP:
|
SNP ID:
sf1101200265(Gbrowse)
Chromosome: chr11 Position: 1200265 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.45% | 38.55% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101200265 | A->G | INTERGENIC | None |