Detailed information of SNP:
|
SNP ID:
sf1101201803(Gbrowse)
Chromosome: chr11 Position: 1201803 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1278 | 90.69% | 9.31% |
| All Indica | 668 | 82.34% | 17.66% |
| All Japonica | 492 | 99.80% | 0.20% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 282 | 67.38% | 32.62% |
| Indica II | 193 | 96.37% | 3.63% |
| Indica Intermediate | 193 | 90.16% | 9.84% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101201803 | G->A | LOC_Os11g03270(LOC_Os11g03270.1) | Synonymous |