Detailed information of SNP:
|
SNP ID:
sf1101236048(Gbrowse)
Chromosome: chr11 Position: 1236048 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.06% | 43.94% |
| All Indica | 799 | 86.98% | 13.02% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101236048 | G->C | INTERGENIC | None |