Detailed information of SNP:
|
SNP ID:
sf1101239218(Gbrowse)
Chromosome: chr11 Position: 1239218 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 90.42% | 9.58% |
| All Indica | 712 | 82.16% | 17.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 323 | 72.14% | 27.86% |
| Indica II | 193 | 98.96% | 1.04% |
| Indica Intermediate | 196 | 82.14% | 17.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101239218 | G->T | LOC_Os11g03310(LOC_Os11g03310.1) | SNPs that introduce initiation codons |